edited by John C Avise (University of California, Irvine, USA)

Table of Contents (944k)
Introduction (1,953k)
Part 1.1: Evolutionary genetics of cave-dwelling fishes of the genus Astyanax (4,787k)

This volume is a reprinted collection of 69 “classics” from the Avise laboratory, chosen to illustrate a trademark brand of research that harnesses molecular markers to scientific studies of natural history and evolution in the wild. Spanning the early 1970s through the late 2000s, these articles trace how the author and his colleagues have used molecular genetics techniques to address multifarious conceptual topics in genetics, ecology, and evolution, in a fascinating menagerie of creatures with oft-peculiar lifestyles. The organisms described in this volume range from blind cavefish to male-pregnant pipefishes and sea spiders, from clonal armadillos to natal-homing marine turtles, from hermaphroditic sea snails to hybridizing monkeys and tree frogs, from clonal marine sponges to pseudohermaphroditic mollusks to introgressing oysters, and from endangered pocket gophers, terrapins, and sparrows to unisexual (all-female) fish species to “living-fossil” horseshoe crabs, and even to a strange little fish that routinely mates with itself. The conceptual and molecular topics addressed in this volume are also universal, ranging from punctuated equilibrium to coalescent theory to the need for greater standardization in taxonomy, from cytonuclear disequilibrium statistics to the ideas of speciation duration and sympatric speciation, from historical population demography to phylogenetic reconstructions of males' sexual ornaments, from the population genetic consequences of inbreeding to Pleistocene effects on phylogeography, and from the molecular underpinnings of null alleles to the notion of clustered mutations that arise in groups to compelling empirical evidence for the unanticipated processes of gene conversion and concerted evolution in animal mitochondrial DNA. Overall, this collection includes many of the best, most influential, sometimes controversial, occasionally provocative, always intriguing, or otherwise entertaining publications to have emerged from the Avise laboratory over the last four decades. Thus, this book conveys, through the eyes of one of the field's longstanding pioneers, what “the organismal side” of molecular ecology and evolution really means.

• Genetic Variation, Population Structure, and Phylogeography:
  • Genetic Variation and Geographic Differentiation in Mitochondrial DNA of the Horseshoe Crab, Limulus Polyphemus (N C Saunders et al.)
  • A Genetic Test of Natal Homing versus Social Facilitation Models for Green Turtle Migration (A B Meylan et al.)
  • Balancing Selection at Allozyme Loci in Oysters: Implications from Nuclear RFLPs (S A Karl & J C Avise)
• Clonality, Unisexuality, and Hermaphroditism:
  • An Ancient Clonal Lineage in the Fish Genus Poeciliopsis (Atheriniformes: Poeciliidae) (J M Quattro et al.)
  • Long-Term Retention of Self-Fertilization in a Fish Clade (A Tatarenkov et al.)
• Genetic Parentage, Kinship, and Mating Behaviors:
  • Genetic Evidence for Extreme Polyandry and Extraordinary Sex-Role Reversal in a Pipefish (A G Jones et al.)
• Hybridization and Introgression Phenomena:
  • Cytonuclear Introgressive Swamping and Species Turnover of Bass After an Introduction (J C Avise et al.)
• Genetic Diagnoses of Endangered Species:
  • Evolutionary Distinctiveness of the Endangered Kemp's Ridley Sea Turtle (B W Bowen et al.)
• Phylogeny and Macroevolutionary Patterns:
  • Comparative Phylogenetic Analysis of Male Alternative Reproductive Tactics in Ray-Finned Fishes (J E Mank & J C Avise)
• Population-Genetic, Speciational, and Evolutionary Theory:
  • Definition and Properties of Disequilibrium Statistics for Associations Between Nuclear and Cytoplasmic Genotypes (M A Asmussen et al.)
  • Hemiplasy: A New Term in the Lexicon of Phylogenetics (J C Avise & T J Robinson)
• Molecular-Level Features and Processes:
  • Clustered Microsatellite Mutations in the Pipefish Syngnathus Typhle (A G Jones et al.)
  • Rapid Concerted Evolution in Animal Mitochondrial DNA (A Tatarenkov & J C Avise)
• Appendix:
  • Complete List of Publications by Avise and Colleagues from 1972–2010
• and other papers